E-commerce11 min read

Shopify Plus vs Custom B2B E-commerce for DTC and Wholesale Brands (2026)

Mohamed Bah·Fondateur, Kolonell
October 7, 2026
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Shopify Plus vs Custom B2B E-commerce for DTC and Wholesale Brands (2026)

Shopify Plus vs Custom B2B E-commerce for DTC and Wholesale Brands (2026)

E-commerce

The verdict in three sentences

For a Paris brand selling both to consumers and to a network of retailers, Shopify Plus (from 2,300 USD per month, about 2,000 EUR) with 20,000 to 50,000 EUR excl. VAT of integration remains the fastest choice when B2B rules are simple. A custom B2B e-commerce build at 50,000 to 120,000 EUR excl. VAT becomes more cost-effective once net prices per retailer, quotes and ERP sync get complex. Over 3 years, total cost of both options is often within 10%, and timelines range from 3 to 6 months.

Three-year total cost, line by line

A fair comparison is not about launch price but total cost of ownership, including licence, apps, maintenance and enhancements.

3-year item (2026 order of magnitude)Shopify PlusCustom build
Initial setup35,000 EUR85,000 EUR
Platform licence (about 2,000 EUR per month)72,000 EUR0 EUR
Third-party apps (B2B, reviews, ERP, search)18,000 EUR0 to 5,000 EUR
Hosting and managed servicesincluded14,400 EUR
Maintenance and enhancements36,000 EUR54,000 EUR
3-year total161,000 EUR153,400 to 158,400 EUR
Time to launch3 to 4 months5 to 6 months

Note: above a certain sales volume, Shopify Plus charges a variable share of revenue instead of the flat fee. For a brand selling several million euros online per year, the licence can double and tip the comparison towards custom.

What Shopify Plus native B2B covers, and where it stops

Shopify Plus offers native B2B features: company profiles, price catalogues per customer, minimum quantities and net payment terms. For many brands that is enough. Difficulties appear in more advanced cases.

B2B requirementShopify PlusCustom build
Prices per retailer on a 500-product catalogueNativeNative
Negotiated net prices on 10,000 customer and product combinationsPossible but heavy to maintainCalculated from the ERP
Negotiated quotes with sales approvalThird-party appCustom workflow
30 or 60-day terms with ERP credit limitsPartial, credit managed separatelyRead directly from the ERP
Product configurator (sizes, engraving, bundles)Third-party app, monthly feeBuilt once
ERP sync (Sage, Cegid, SAP)Paid connector or middlewareDedicated connector
Quick order by SKU or CSVPartialNative

Rule of thumb: if more than three rows of this table are critical for your business, custom or a hybrid architecture (Shopify for B2C, a custom portal for B2B) is worth pricing.

The hybrid scenario, often the best compromise

Many Paris brands keep Shopify for the consumer store, where the marketing ecosystem is unbeatable, and add a custom retailer portal connected to the same inventory.

OptionInitial budget excl. VATTimelineIdeal profile
Shopify Plus only (B2C and B2B)20,000 to 50,000 EUR3 to 4 monthsUnder 200 retailers, simple prices
Hybrid Shopify plus B2B portal45,000 to 80,000 EUR4 to 5 months200 to 1,000 retailers, negotiated prices
Full custom50,000 to 120,000 EUR5 to 6 months1,000+ retailers, ERP-centric
Recurring monthly cost2,000 to 4,500 EURDepending on licence and maintenance

Mini case study

Julie, co-founder of a cosmetics brand in Paris, generates 3.2 million EUR in revenue: 60% direct and 40% through 350 pharmacies and concept stores. Her retailers have negotiated net prices and order in bundles.

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  • Shopify Plus only: 161,000 EUR over 3 years, plus 9,000 EUR of quote and quick-order apps, i.e. 170,000 EUR.
  • Hybrid: standard Shopify store (about 400 EUR per month, 14,400 EUR over 3 years) with 20,000 EUR integration, plus a 45,000 EUR custom B2B portal and 900 EUR per month maintenance (32,400 EUR), i.e. about 112,000 EUR over 3 years.

Estimated saving: about 58,000 EUR over 3 years with the hybrid, for a 4 to 5 month timeline. The final choice depends on the roadmap: if Julie plans international multi-currency expansion, Shopify Plus becomes relevant again for the B2C side.

FAQ

Is Shopify Plus required for B2B on Shopify?

The most complete native B2B features are reserved for Shopify Plus, from 2,300 USD per month. Lower plans need third-party apps, at 50 to 300 USD per month each.

Is a custom build riskier?

The risk is mainly timeline, 5 to 6 months instead of 3 to 4. It is managed with precise specifications and deliveries every 2 weeks, so the retailer journey can be tested from month two.

Can we migrate from Shopify to custom later?

Yes. Migrating products, customers and orders usually costs 8,000 to 20,000 EUR excl. VAT. That is an argument for starting on Shopify while B2B is still marginal.

Who owns the code and the data?

With custom, you own the code outright. With Shopify, your data is exportable, but the platform and apps stay under licence and their prices can rise 10 to 20% over 3 years.

What payment fees should we expect?

On Shopify Plus, Shopify Payments fees are negotiated, around 1.5 to 2% per card transaction. On a custom build, Stripe or a bank acquirer typically charges 1.5% + 0.25 EUR for a European card.

Let's scope your project. We compare Shopify Plus, hybrid and custom on your real scope (retailers, catalogue, ERP), with an indicative budget between 20,000 and 120,000 EUR excl. VAT and a 3 to 6 month timeline. Detailed quote within 48 h. WhatsApp +221 77 596 93 33.

Tags:#Shopify Plus#B2B e-commerce#custom build#Paris#comparison#2026
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Mohamed Bah

Fondateur, Kolonell

Passionate about digital and entrepreneurship in Africa, Mohamed has been helping Sénégalese businesses with their digital transformation since 2020. Founder of Kolonell, he believes every SME deserves a professional and accessible online présence.