E-commerce11 min read

Leaving Magento 2: migrate to Shopify Plus or a custom build in 2026?

Mohamed Bah·Fondateur, Kolonell
October 6, 2026
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Leaving Magento 2: migrate to Shopify Plus or a custom build in 2026?

Leaving Magento 2: migrate to Shopify Plus or a custom build in 2026?

E-commerce

The verdict in three sentences

If your Magento 2 maintenance exceeds EUR 50,000 a year and your B2B rules are standard, Shopify Plus is in 2026 the option with the lowest total cost over 5 years. A custom headless build (EUR 90,000 to 180,000 excl. VAT) is justified when business logic is your competitive edge: configurators, complex pricing, multi-warehouse, intertwined B2B and B2C catalogs. Either way, SEO and customer history migration matter more to success than the platform choice: a sloppy redirect plan can cost 15 to 30% of organic traffic for months.

Why Magento 2 is getting expensive in 2026

Magento Open Source is still powerful, but it requires regular security patches, heavy version upgrades, ten to twenty extensions to maintain and tuned hosting. Experienced Magento developers are scarce in France, with day rates of EUR 650 to 900. For an EUR 8M site, the typical annual bill breaks down as: corrective and evolutive maintenance EUR 60,000, hosting and CDN EUR 24,000, extension licences EUR 12,000, i.e. EUR 96,000 a year before any new feature.

Comparison of the three options

CriterionStay on Magento 2Shopify PlusCustom headless
Project costVersion upgrade EUR 30,000 to 50,000 every 2 yearsMigration EUR 40,000 to 90,000EUR 90,000 to 180,000
Licence or subscriptionEUR 0 (Open Source)USD 2,300 a month, about EUR 25,400 a yearEUR 0 to 30,000 depending on engine
HostingEUR 24,000 a yearIncludedEUR 18,000 to 30,000 a year
Apps or extensionsEUR 12,000 a yearEUR 12,000 to 24,000 a yearBuilt, included
MaintenanceEUR 60,000 a yearEUR 20,000 to 30,000 a yearEUR 30,000 to 45,000 a year
B2B features (accounts, pricing, quotes)Rich, via extensionsNative since 2024, limits on complex casesUnlimited
Lead time3 to 4 months per upgrade4 to 6 months6 to 10 months
DependencyMagento agencyShopify as vendorYour code, your team

These ranges are a 2026 order of magnitude for a 5,000 to 20,000-SKU catalog, 2 languages and a connected ERP. Above roughly USD 800,000 in monthly sales, Shopify Plus applies a 0.25% variable fee; with a third-party PSP, add about 0.2% in transaction fees.

Total cost over 5 years

Item (5 years)Magento 2Shopify PlusCustom headless
Initial project and upgradesEUR 80,000EUR 65,000EUR 135,000
Licence or subscriptionEUR 0EUR 127,000EUR 25,000
HostingEUR 120,000EUR 0EUR 120,000
Apps or extensionsEUR 60,000EUR 90,000EUR 0
MaintenanceEUR 300,000EUR 125,000EUR 175,000
Estimated totalEUR 560,000EUR 407,000EUR 455,000

The gap between Magento and Shopify Plus reaches about EUR 150,000 over 5 years. Headless costs more than Shopify Plus but keeps code ownership and independence from the vendor.

Getting SEO and history migration right

The migration must carry over every indexed URL with one-to-one 301 redirects, title and meta tags, product structured data, customer reviews and accounts with their order history. Passwords cannot be migrated: plan an account activation campaign. A traffic dip of 5 to 10% for 4 to 8 weeks is normal; beyond that, the redirect plan is at fault. Budget EUR 8,000 to 20,000 for the SEO audit, mapping and post-migration monitoring.

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Julien, e-commerce director of a B2B2C professional equipment site in Bordeaux, generates EUR 8M in online revenue at a 32% gross margin. His Magento bill reaches EUR 96,000 a year. Migrating to Shopify Plus for a EUR 70,000 project brings recurring costs down to about EUR 68,000 a year, EUR 28,000 saved every year. A faster site (mobile load time from 4.1 s to 2.2 s) lifts conversion from 1.8% to 1.9%, i.e. +EUR 444,000 in revenue and about EUR 142,000 of gross margin a year. The project pays back in under 6 months, excluding the SEO stabilisation period.

FAQ

Does Shopify Plus suit a B2B2C site?

Yes, with company-specific B2B catalogs, payment terms and a B2C store on the same instance. Cases with more than 5,000 price lists or complex quotes need extra development of EUR 10,000 to 30,000.

How long does a Magento to Shopify Plus migration take?

Plan 4 to 6 months for 5,000 to 20,000 SKUs: 6 weeks of scoping and data, 10 weeks of development, 4 weeks of testing and cutover.

Can we keep Magento for B2B and Shopify for B2C?

It is possible but doubles maintenance. For EUR 8M in revenue, a single platform cuts costs by 30 to 40%.

What happens to customer order history?

It is imported via API, usually for the last 3 to 5 years. Older orders remain available in the ERP or an archived export.

Is headless too risky for an SME?

It requires a team or agency maintaining the code over time, EUR 30,000 to 45,000 a year. Without that guaranteed budget, Shopify Plus is safer.

Let's scope your project. Send us your online revenue, SKU count, Magento extensions and ERP: we will price the migration to Shopify Plus or headless between EUR 40,000 and 180,000 excl. VAT, with an SEO migration plan. Detailed quote within 48 h. WhatsApp +221 77 596 93 33.

Tags:#Magento migration#Shopify Plus#headless commerce#replatforming#e-commerce total cost#SEO migration
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Mohamed Bah

Fondateur, Kolonell

Passionate about digital and entrepreneurship in Africa, Mohamed has been helping Sénégalese businesses with their digital transformation since 2020. Founder of Kolonell, he believes every SME deserves a professional and accessible online présence.