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Customs Brokerage Software Cost in Mombasa (2026)

Mohamed Bah·Fondateur, Kolonell
October 5, 2026
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Customs Brokerage Software Cost in Mombasa (2026)

Customs Brokerage Software Cost in Mombasa (2026)

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The verdict in three sentences

For a port customs broker handling 300 files a month, custom software for file tracking, disbursement management, invoicing and single-window integration costs 10 to 25 million FCFA excl. VAT, about USD 16,500 to 41,000. The first gain is financial: invoicing time falls from 12 to 3 days and unbilled disbursements drop by 4% of revenue. On USD 1.5 million of revenue, that is USD 60,000 a year, more than the project itself.

Functional scope and cost

ModuleContent2026 budget (FCFA excl. VAT)Timeline
Import and export filesOpening, bills of lading, containers, status per step, scanned documents2,000,000 to 4,500,000 (USD 3,300 to 7,400)4 weeks
DisbursementsDuties and taxes, port charges, handling, storage, advances per file1,800,000 to 4,000,000 (USD 3,000 to 6,600)3 weeks
InvoicingAgency fees, re-billed disbursements, VAT, pro formas, reminders1,500,000 to 3,500,000 (USD 2,500 to 5,800)3 weeks
Single-window interfaceExchanges with the national single window and customs system, status retrieval, alerts2,000,000 to 6,000,000 (USD 3,300 to 9,900)4 to 6 weeks
Client portalOnline container tracking, documents, invoices, mobile money payment1,500,000 to 4,000,000 (USD 2,500 to 6,600)3 weeks
Dashboards and accountingMargin per file, receivables, export to Sage or Odoo1,200,000 to 3,000,000 (USD 2,000 to 5,000)2 weeks

The single-window interface is the most variable item: its complexity depends on the API access granted and the available exchange formats. In Mombasa that means KenTrade and the customs management system. A file-import start is possible for 2 million FCFA (USD 3,300), with full automation in a second release.

Excel, imported package or custom

CriterionExcel and paperImported brokerage packageCustom
Upfront cost015 to 40 million FCFA licence (USD 25,000 to 66,000)10 to 25 million FCFA
Annual costLost time15 to 20% of licence1.5 to 3.5 million FCFA (USD 2,500 to 5,800)
Local procedures and single windowDouble entryPaid customisationBuilt in
Unbilled disbursements4 to 6% of revenue1.5 to 2%under 1%
Invoicing delay12 days5 to 7 days3 days
SupportIn-houseOften from EuropeLocal business hours

Indicators to track after go-live

IndicatorBeforeAfter 6 months (2026 order of magnitude)
Average invoicing delay12 days3 days
Unbilled disbursements4.5% of revenue0.5% of revenue
Days sales outstanding75 days50 days
Client calls for container status40 per day10 per day
Month-end close6 days2 days
Avoidable storage penaltiesUSD 13,000 to 20,000 per yearUSD 5,000

Mini case study

James runs a 45-person customs brokerage at the port of Mombasa, with 300 files a month and revenue equivalent to 900 million FCFA (about USD 1.5 million). Unbilled disbursements reach 4.5% of revenue, i.e. 40.5 million FCFA. The software brings them to 0.5%, a gain of 36 million FCFA a year (USD 59,000). Cutting collection time by 25 days frees about 900 / 365 × 25 = 61 million FCFA of cash (USD 100,000). The chosen project costs 18 million FCFA (USD 30,000) plus 2.5 million annual maintenance: it pays back in under 7 months on disbursements alone.

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Does the software connect directly to the single window?

It depends on the access granted to licensed brokers. We start by importing available files and messages, then automate once an API is opened. Budget 2 to 6 million FCFA (USD 3,300 to 9,900) for this module.

Can we manage several ports and borders?

Yes, Mombasa, inland container depots and transit corridors to Uganda or Rwanda are configured as sites. Each extra site adds 500,000 to 1,500,000 FCFA (USD 800 to 2,500).

Can clients pay by mobile money?

Yes, through the client portal, using M-Pesa, Wave or Orange Money depending on the market. Fees are around 1% per transaction, and payments are matched to invoices automatically.

How long does the project take?

Allow 4 to 6 months: 3 weeks of scoping, 12 to 16 weeks of development, then 3 weeks of testing in parallel with Excel.

What happens to files in progress?

Migrating open files and the last 24 months of history costs 800,000 to 2,000,000 FCFA (USD 1,300 to 3,300), with a Monday cut-over to avoid month-end.

Let's scope your project. Tell us your monthly file volume, ports and accounting software, and we will price a scope between 10 and 25 million FCFA with a 4 to 6 month plan. Detailed quote within 48 h. WhatsApp +221 77 596 93 33.

Tags:#customs brokerage software#customs clearance#Mombasa#single window#disbursement management#business software
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Mohamed Bah

Fondateur, Kolonell

Passionate about digital and entrepreneurship in Africa, Mohamed has been helping Sénégalese businesses with their digital transformation since 2020. Founder of Kolonell, he believes every SME deserves a professional and accessible online présence.